References and parameters used

The following interface serves as a visualization of the results produced by TSS-CAPTUR. The possibility exists between an overview of all results or the detailed results of the classification or the terminator allocation steps of TSS-CAPTUR. The possibility of some TSS being ignored by TSS-CAPTUR due to their short length exists. They are found here. For the more information on the tools and parameters used in TSS-CAPTUR, please refer to the references.

TSS-CAPTUR combines multiple tools to characterize transcripts starting at the analyzed TSSs, such as their class, putative terminator regions, their secondary structure and enriched motifs at the promoter regions. Here is a short overview of the tools used in TSS-CAPTUR, together with the parameters used for each tool. For a complete list of tools and parameters, please refer to the preprint or the GitHub repository.