Classification

The following interface serves as a visualization of the results produced by TSS-CAPTUR. The possibility exists between an overview of all results or the detailed results of the classification or the terminator allocation steps of TSS-CAPTUR. The possibility of some TSS being ignored by TSS-CAPTUR due to their short length exists. They are found here. For the more information on the tools and parameters used in TSS-CAPTUR, please refer to the references.

The current page presents a detailed view on the results on the transcript classification. TSS-CAPTUR uses two programs (CNIT and QRNA) to classify the transcripts in either coding (COD) or non-coding (RNA) transcripts. The following table allows the access to the final classification and some intermediate steps before it, such as which organism was used for the pairwise alignment for QRNA. Since both programs used different scoring functions, a normalized z-score is given. If both programs agree on the prediction, the subcoordinates of the program with the highest z-score are used. If the predictions differ, TSS-CAPTUR labels the transcript as a coding sequence.