Overview of data
The following interface serves as a visualization of the results produced by TSS-CAPTUR. The possibility exists between an overview of all results or the detailed results of the classification or the terminator allocation steps of TSS-CAPTUR. The possibility of some TSS being ignored by TSS-CAPTUR due to their short length exists. They are found here. For the more information on the tools and parameters used in TSS-CAPTUR, please refer to the references.
The current page presents an overview of the results of all steps run in TSS-CAPTUR, for example, the length of the transcript originally extracted from the genome and the predicted classification. Moreover, a terminator might have been allocated to the transcript and the length of the transcript would have been adapted. Also, a secondary structure analysis is run using RNAFold for the transcripts, providing a visualization of its structure. All transcript undergo a motif analysis of the promoter region using MEME. A short descriptive overview follows: